Programming for Biologists Training Course

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Client Testimonials

Introductory R for Biologists

What did you like the most about the training?:

I liked the fact that we were all the time busy programming, so I had to focus the whole time.

Katarzyna Hutnik - University of Oxford, Department of Oncology

Introductory R for Biologists

What did you like the most about the training?:

I think the trainer was brilliant.

A fully qualified teacher with training experience.

Enric Domingo - University of Oxford, Department of Oncology

Course Language

This course is delivered in English.

Course Code

progbio

Duration Duration

28 hours (usually 4 days including breaks)

Requirements Requirements

Basic biological knowledge about protein, RNA and DNA sequences.

Overview Overview

This is a practical course, which shows why programming is a powerful tool in the context of solving biological problems. During the course participants will be taught the Python programming language, a language widely considered both powerful as well as easy to use. This course might be considered as a demonstration how bioinformatics improves biologists lives.

The course is designed and aimed for people without computer science background who want to learn programming.

This course is suited for:

  • Researchers dealing with biological data.
  • Scientists who would like to learn how to automate everyday tasks and analyse data.
  • Managers who want to learn how programming improves workflows and conducting projects.

By the end of the course, participants will be able to write short programs, which will allow them to manipulate, analyse and deal with biological data and present results in a graphical format.

Course Outline Course Outline

Introduction to the Python programming language

  • Why Python?
  • Using Python to deal with biological data
  • Working with the iPython shell
  • Your first programme
  • Writing Python scripts
  • Importing modules

Working with protein and RNA/DNA sequences

  • Finding motives
  • Transcription and translation in silico
  • Handling sequence alignments

Parsing data in different biological formats

  • Parsing FASTA
  • Data format conversions

Running biological analyses

  • BLAST
  • Accessing biological web services

Dealing with biological 3D structures using Python

Python facilitates statistical analysis

Visualizing data

  • Creating bar and scatter plots
  • Calculating an Area Under Curve (AUC)

Working with .xls and .csv files

  • Importing data from and exporting to MS Excel / OpenOffice Calc
  • Writing .xls and .csv files

Using Python to create an automated data processing pipeline


Guaranteed to run even with a single delegate!
Public Classroom Public Classroom
Participants from multiple organisations. Topics usually cannot be customised
From $8960
(149)
Private Classroom Private Classroom
Participants are from one organisation only. No external participants are allowed. Usually customised to a specific group, course topics are agreed between the client and the trainer.
From $8960
Request quote
Private Remote Private Remote
The instructor and the participants are in two different physical locations and communicate via the Internet
From $7160
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SelfStudy SelfStudy
Self-study courses allow you to learn at your own pace on your own time. There is no live instructor involved. The participants use recorded video, quizzes and reading at their own convenience.
Price not set yet
Register Interest

The more delegates, the greater the savings per delegate. Table reflects price per delegate and is used for illustration purposes only, actual prices may differ.

Number of Delegates Public Classroom Private Classroom Private Remote
1 $8960 $8960 $7160
2 $5055 $5005 $4105
3 $3753 $3687 $3087
4 $3103 $3028 $2578
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